PGML0088, PGML0088 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0088
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TATAA)3
Primer 1PGML0088_F: GATGTCTATGGGTCAAACTTGG
Primer 2PGML0088_R: CCTGCATATGTCAGCATCCA
Product Length201
Publication[view all]
CommentBAC_ID=FITB2022.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:30937517..30937717 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:29457618..29457818 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018219.1chromosomeCM018219.1:29398990..29399181 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:35364117..35364322 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:28139232..28139431 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_05chromosomeD5_05:28061628..28061816 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:32384675..32384875 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:69586256..69586445 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:37506827..37507031 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:30156972..30157172 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:30298131..30298331 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:29539078..29539278 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:30125253..30125453 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:29754526..29754726 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:30026884..30027084 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D05chromosomeGbar_D05:29968254..29968445 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:34208373..34208578 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:29760243..29760443 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D05chromosomeD05:29701594..29701785 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:35725626..35725831 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:29706333..29706533 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:30114567..30114767 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:29838247..29838447 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017705.1chromosomeCM017705.1:29779764..29779955 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:35598996..35599201 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:30809078..30809278 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:37601476..37601679 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:28286721..28286919 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:28209044..28209233 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_09chromosomeChr_09:24310420..24310620 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr_09chromosomeChr_09:24310753..24311380 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:29981765..29981973 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:23138585..23138790 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:23448057..23448257 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr05chromosomeChr05:80591394..80591610 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0088 ID=PGML0088; Name=PGML0088; organism=Gossypium raimondii; type=genetic_marker; length=201bp
GATGTCTATGGGTCAAACTTGGACAAAATAATTTTTTACCTTAATCTTGT
CTGGCCAAAAAAGAAAATTAAATATAATTATAAATATAAAATATTATAAA
TATTGATATGTTCATATATAATATAATATAATATTTTAATTAATTTTCAT
GGTGCCTAAAATTTGAAAGTCTAAAAAGAAGTGGATGCTGACATATGCAG
G