PGML0085, PGML0085 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0085
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAAGG)3
Primer 1PGML0085_F: GGAGACATGCTGATTGCCTT
Primer 2PGML0085_R: AAAGAGGGTGTGAGTGGTGG
Product Length269
Publication[view all]
CommentBAC_ID=FITB1997.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:12501692..12501956 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:13469936..13470203 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:11627068..11627336 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:13111666..13111934 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:54507107..54507375 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:110717887..110718155 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:11367278..11367546 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:17462916..17463184 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr7chromosomeDt_chr7:10903912..10904176 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:12134443..12134707 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:13185141..13185408 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:12071879..12072143 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:13529586..13529853 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:11810096..11810360 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:13087115..13087382 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:12124390..12124654 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:13274499..13274766 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:11892787..11893051 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:13638475..13638742 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:11902414..11902682 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:12862452..12862720 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:11818898..11819166 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:13127231..13127499 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:11769448..11769716 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:13379524..13379792 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:12036441..12036709 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:13484733..13485001 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:11863338..11863606 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:13349422..13349691 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:12315735..12315999 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:13783914..13784181 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:13902126..13902399 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:13608892..13609160 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:51987658..51987926 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:12867971..12868239 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:11524641..11524909 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_07chromosomeChr_07:10229617..10229885 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:11674700..11674968 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:9217624..9217888 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:8191548..8191815 +Gossypium gossypioides (D6) genome ISU_v1n/a
E11chromosomeE11:14414767..14415035 +Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:11485387..11485654 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:167010498..167010764 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0085 ID=PGML0085; Name=PGML0085; organism=Gossypium raimondii; type=genetic_marker; length=269bp
GGAGACATGCTGATTGCCTTAAGATTTCACTTGCTTGTGGGTGTGATATG
GTGAGAGCAGAATATATGTGCTTAAAGGAAAGGAAAGGAGGGTCTCTAAT
GTTCTCAAAGCACATGATCCTTATTAAAAGACACAATGATGCATTTGCAC
TATCCTTTGACAATTTCAGCACCCCCAATCTTACCCCCAAACACCACTTA
CCTTAACCCAAATTGCACTGTGTGCCCTCCTCTTTTAAGGAATGTTATCC
CACCACTCACACCCTCTTT