PGML0079, PGML0079 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0079
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAAATC)5,(AAAAG)3
Primer 1PGML0079_F: GTCCTCTGGGTTCAGATCCA
Primer 2PGML0079_R: TGAAATTTGAGTCGCCCTTT
Product Length226
Publication[view all]
CommentBAC_ID=FITB2299.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:35330992..35331218 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D02chromosomeD02:20334735..20334963 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:32214497..32214722 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018227.1chromosomeCM018227.1:43063626..43063852 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:31851208..31851433 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_13chromosomeD5_13:41921540..41921761 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr10chromosomeDt_chr10:35477402..35477629 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr5chromosomeDt_chr5:63374404..63374632 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold94395supercontigscaffold94395:194..427 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D06chromosomeD06:33435446..33435673 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D02chromosomeD02:20015777..20016005 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:33634588..33634814 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D02chromosomeGhir_D02:19671541..19671769 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:32952150..32952377 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:19134889..19135117 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:33446880..33447107 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:19594816..19595044 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:32688209..32688435 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D02chromosomeD02:19650660..19650888 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:32367693..32367918 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D13chromosomeGbar_D13:42789324..42789550 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:32065150..32065375 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D13chromosomeD13:44175036..44175262 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:33025162..33025388 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017624.1chromosomeCM017624.1:19553454..19553683 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017635.1chromosomeCM017635.1:43978298..43978526 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:46901692..46901916 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017651.1chromosomeCM017651.1:5573467..5573702 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:32396989..32397208 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:33859384..33859610 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D02chromosomeD02:20047317..20047545 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:31650332..31650557 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:41963565..41963788 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Sequence
>PGML0079 ID=PGML0079; Name=PGML0079; organism=Gossypium raimondii; type=genetic_marker; length=226bp
GTCCTCTGGGTTCAGATCCAATTTTAAAAAAAAAAAGAAGAAGAAAAAAA
TCAAAATCAAAATCAAAGTCAAAAGCAAAAAGAGAAATCAATCAAAGTCA
AAATAAAAAATATGAAAAGCGAAAAAAGAAAAGAAAAGGAGAGGCCAAGG
CGAAAACCCAAAAAGGGCGCCTTGTAACCAAAGGTGGTTTTGAGTTGAAA
ACCCTAAAAGGGCGACTCAAATTTCA