PGML0074, PGML0074 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0074
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TTATGT)3
Primer 1PGML0074_F: TCTCCCATGCTTGCTTTCTT
Primer 2PGML0074_R: CGAGGCACACCCTGTCTTTA
Product Length207
Publication[view all]
CommentBAC_ID=FITB4336.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:39975388..39975594 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:39561365..39561571 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:34757220..34757426 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_01chromosomeD10_01:22798756..22798959 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr4chromosomeAt_chr4:43925415..43925621 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:37621788..37621994 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:39306718..39306924 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:41185413..41185619 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:40680011..40680217 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
Scaffold907supercontigScaffold907:20273..20479 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:40575453..40575659 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:40443018..40443224 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:41345926..41346132 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:39853642..39853848 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:41105820..41106026 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:30326154..30326360 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:5049766..5049966 -Gossypium anomalum (B1) genome NSF_v1n/a
B_01chromosomeB_01:66258764..66258965 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:38604840..38605040 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:29896103..29896309 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:27011143..27011346 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:38774760..38774966 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:29800274..29800480 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:22775520..22775713 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:28371639..28371846 +Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:2189523..2189730 +Gossypium stocksii (E1) genome NSF_v1n/a
E03chromosomeE03:2285914..2286117 -Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:106059256..106059462 +Gossypium longicalyx (F1) genome NSF_v1n/a
F03chromosomeF03:106068882..106069086 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0074 ID=PGML0074; Name=PGML0074; organism=Gossypium raimondii; type=genetic_marker; length=207bp
TCTCCCATGCTTGCTTTCTTACTTTACTTTGCATTGGTTAAAGTGATTAC
CTCATACCTCAAACAAATCTGGGTTAATGTTTTTGAAATACTTTAAGGGT
TATTTGAGTACACTGATTTATGTTTATGTTTATGTTCGCATCTTCATAAT
AAGGTTATTTGAATTTAGTTTTCAACCCCTTCTACCTTAAAGACAGGGTG
TGCCTCG