PGML0050, PGML0050 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0050
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(A)16
Primer 1PGML0050_F: TGAATTGAAGTTGTAGAAACCAAA
Primer 2PGML0050_R: CTGTCCCACAAGCAATGAAA
Product Length213
Publication[view all]
CommentBAC_ID=FITB4594.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:36350773..36350981 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:34084996..34085205 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:27596476..27596688 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_03chromosomeKI_03:29571512..29571721 +Gossypioides kirkii genome ISU_v3n/a
D10_03chromosomeD10_03:27910581..27910790 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr12chromosomeAt_chr12:46026725..46026933 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:33957736..33957944 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:35934353..35934561 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:36650077..36650285 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:37659981..37660189 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:34740429..34740637 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:34609449..34609658 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:35878865..35879074 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:36837183..36837392 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:37288948..37289155 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:35430128..35430336 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:38154658..38154866 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:36030318..36030524 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:38032535..38033020 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_05chromosomeChr_05:24665272..24665573 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:39397831..39398041 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:25151457..25151654 +Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:21168427..21168645 +Gossypium gossypioides (D6) genome ISU_v1n/a
Sequence
>PGML0050 ID=PGML0050; Name=PGML0050; organism=Gossypium raimondii; type=genetic_marker; length=213bp
TGAATTGAAGTTGTAGAAACCAAAATACAACAAAACATGCTACAACTGTG
TTTTTTTTTTTTTTTTACATTGAGTAGGTTAATTAATGCCTTAAACACAA
ATAAAAGAATGGATAATTTTATCTTAACAATTCTTTTATACTTTTCATCT
ACATAGGAAAGTAACTTTCTCACCAATTATTAAGGGAATCACTTTTCATT
GCTTGTGGGACAG