PGML0045, PGML0045 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0045
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TATT)5
Primer 1PGML0045_F: TCAGCTGAAAGTTCTCCGGT
Primer 2PGML0045_R: CTTCACGATGTGGTGGATTG
Product Length257
Publication[view all]
CommentBAC_ID=FITB4305.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:27426343..27426599 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D5_01chromosomeD5_01:24929030..24929286 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_01chromosomeD10_01:35161898..35162149 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_01chromosomeD10_01:35141310..35141561 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr2chromosomeDt_chr2:31290852..31291108 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:25586871..25587127 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:26743802..26744058 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:26149099..26149355 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:26355903..26356159 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:26603184..26603440 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
CM017623.1chromosomeCM017623.1:26489840..26490104 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:27800325..27800581 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D01chromosomeD01:27104472..27104728 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:20164984..20165240 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:25827058..25827308 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_02chromosomeChr_02:18587839..18588090 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:25564805..25565057 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:21641937..21642179 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:20016207..20016449 -Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0045 ID=PGML0045; Name=PGML0045; organism=Gossypium raimondii; type=genetic_marker; length=257bp
TCAGCTGAAAGTTCTCCGGTGGCAATACGAATTGTCTCGGTTCTAAAAAA
GAACTTCTCTTTTAAATTTATTTTGGTTTTAGATTTTATTTTCATGTGTT
TATTTTTATTTTTCGTTTTCTTATTTTAAGCTTTGAATTATATTATTTAT
TTATTTATTTATTAGAAGTTGTTCAACTCGTAAAGTGAACGAATCAAAGA
ATCAAAGAAGTCAAACTTCGCATGGAGAGATCTGAACCAATCCACCACAT
CGTGAAG