PGML0042, PGML0042 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0042
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(T)19
Primer 1PGML0042_F: TTGAGATTCGGTGCTCACAA
Primer 2PGML0042_R: AACCTGGGATGAAAGGGTTT
Product Length195
Publication[view all]
CommentBAC_ID=FITB7656.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:41944678..41944864 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:71350520..71350709 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:36531294..36531489 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:77647957..77648146 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:24561299..24561490 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:74316011..74316200 -Gossypium australe (G2) genome CRI_v1.1n/a
D06chromosomeD06:39049824..39050010 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:41469573..41469758 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:40953627..40953813 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:40858625..40858811 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:37935697..37935883 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A06chromosomeGbar_A06:70267169..70267358 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:73168534..73168723 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017654.1chromosomeCM017654.1:41003208..41003395 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:73210561..73210750 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:41284655..41284841 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:69238314..69238503 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:79035264..79035453 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:36397447..36397636 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:38049334..38049515 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:38676437..38676630 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_10chromosomeChr_10:27256066..27256264 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:40179913..40180098 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:26067568..26067757 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr06chromosomeChr06:42674690..42674881 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0042 ID=PGML0042; Name=PGML0042; organism=Gossypium raimondii; type=genetic_marker; length=195bp
TTGAGATTCGGTGCTCACAAAATTTTGTAATCAGCTTGTCCTTAATGCTA
AACCAACACTATGGAGGTTAACGTATTTATTCATGTACCATAAGATCCTC
ATATAATCTTGTTTCTTTTTTTTTTTTTTTTTTTCTAAAAAACTTGATTT
TTTTTTAAACAACAGTGCTTCATTAAAACCCTTTCATCCCAGGTT