PGML0030, PGML0030 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0030
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(T)15
Primer 1PGML0030_F: GGTACGTTGGCCTGAGGATA
Primer 2PGML0030_R: TCGCCAACTAAATGTAGCAATG
Product Length350
Publication[view all]
CommentBAC_ID=FITB7527.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:9890141..9890487 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:9156813..9157160 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:8732106..8732455 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:7963101..7963446 +Gossypioides kirkii genome ISU_v3n/a
D10_05chromosomeD10_05:51770140..51770489 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:15022845..15023191 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:60284779..60285125 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:9163242..9163588 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:9628580..9628926 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:9386960..9387306 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:9560809..9561155 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:9379235..9379580 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:9526986..9527333 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:9600775..9601122 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:9477800..9478144 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:9783069..9783411 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:9447843..9448190 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:9689794..9690140 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:8773064..8773413 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:75650956..75651310 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:9134206..9134557 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:8341065..8341414 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:8204806..8205244 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:9361975..9362325 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:8245010..8245358 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:6934632..6934982 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:8047677..8048022 +Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:11314374..11314712 +Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:9147768..9148107 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:187426170..187426522 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0030 ID=PGML0030; Name=PGML0030; organism=Gossypium raimondii; type=genetic_marker; length=350bp
GGTACGTTGGCCTGAGGATAATCAAAGAGCGAAAGCGATTGAAATGAAGC
CTGCTGCTGGTCTGCTATTCAGATAACTGGCTAATTGTTTTTAGTTTTCA
ATTCTACTTTTGGTTGGTGATAAATCAAAGGTGTGTCTTAAATTTTGGTG
ATTGGTTTATTCGTAAAAGTAACATGGCTAATAAAGAAGATTGGAGAGGA
TTGTTGTACTCTTCATGTAGAGATGTAAATAGCAGAGATCATGGTATTCT
CTCTCTCTTTTTTTTTTTTTTTGCATTCAGGGTGTCATAATTTTTTTGAT
TTGCTGGTGAAATTTTGATGAATTCATCCATTGCTACATTTAGTTGGCGA