PGML0027, PGML0027 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0027
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAT)6
Primer 1PGML0027_F: TGTCAAATTCGATTACCAAATGA
Primer 2PGML0027_R: ATGTCGATTGATCCTCCTCG
Product Length253
Publication[view all]
CommentBAC_ID=FITB7574.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:495284..495534 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:532817..533067 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:56891107..56891359 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:431674..431894 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:125764152..125764403 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr8chromosomeAt_chr8:43498391..43498641 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:463353..463603 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:506419..506669 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:498288..498538 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:499461..499711 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:887543..887793 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:520878..521128 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:493753..494003 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:502801..503048 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:484689..484939 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:503615..503865 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:522816..523066 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:531920..532172 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:517636..517877 +Gossypium anomalum (B1) genome NSF_v1n/a
chr08chromosomechr08:490473..490662 +Gossypium armourianum (D2-1) genome ISU_v1n/a
F12chromosomeF12:263777..264024 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0027 ID=PGML0027; Name=PGML0027; organism=Gossypium raimondii; type=genetic_marker; length=253bp
TGTCAAATTCGATTACCAAATGATAAATTAAACCTATATTTTAAAGATAA
TTACTCAAATAAAATTGTCAATCAACTTTAGTTCAATAGTAATGTTGAGA
TCAAGAAAACATCGAAATCTCATGGTTATTATTATTATTATTATTGCAAA
AAGAATAAGCATAGATTACATGAACACTTAGGCGTAATGTTCCTACACCA
TTAGCGTCCTGTAACAGCAGACAAACAACATTTCGAGGAGGATCAATCGA
CAT