PGML0021, PGML0021 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0021
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(T)20
Primer 1PGML0021_F: AAGCAGCTGTAGGAGGCTTG
Primer 2PGML0021_R: TGCAGGAATAACTTCCCACC
Product Length265
Publication[view all]
CommentBAC_ID=FITB7533.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:5211736..5212000 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:4762610..4762872 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:61191428..61191691 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:4697841..4698104 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr7chromosomeDt_chr7:3222259..3222523 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:5234419..5234683 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:5034219..5034483 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:4956825..4957089 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:5081379..5081643 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:4985686..4985950 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:4848950..4849212 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:4868787..4869049 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:4796988..4797252 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:5022158..5022425 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:4868624..4868887 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:5124856..5125120 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:58676957..58677215 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:5198032..5198288 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:4650608..4650859 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:4260598..4260861 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr07chromosomeChr07:4873181..4873436 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:3870053..3870380 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:3637422..3637681 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:4109440..4110014 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr09chromosomeChr09:124646182..124646426 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0021 ID=PGML0021; Name=PGML0021; organism=Gossypium raimondii; type=genetic_marker; length=265bp
AAGCAGCTGTAGGAGGCTTGCCTCTATTGCCTGCCCTATAGCTTCTTACG
TTTGATTGAACCATCTGAATTCCAAACTTTCTAATTTGTTGTTCTTTTAG
GTTTGGGTTTTTTTTTTTTTTTTTTTTAATTTTTATTTTTAACATTGTTG
TCTTTCTAACAACTTCCATGTCCTACATCACCTTAACCAAATTTCCTTGC
TTTTTACTTTTGCTCCAGTCATGTGTCTACGACTGGTGGAAACCAGGTGG
GAAGTTATTCCTGCA