PGML0001, PGML0001 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0001
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CA)7
Primer 1PGML0001_F: TGCACAATGTAGCACCTTCTCT
Primer 2PGML0001_R: AACAGCCCGAGAGTTCTTGA
Product Length275
Publication[view all]
CommentBAC_ID=FITB7345.y2
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A09chromosomeA09:46410599..46410873 +
scaffold_255supercontigscaffold_255:35146..35436 -
CM018223.1chromosomeCM018223.1:24653395..24653685 +
CM018210.1chromosomeCM018210.1:43212497..43212770 +
D5_09chromosomeD5_09:19472840..19473112 +
KI_09chromosomeKI_09:18967608..18967878 +
KI_10chromosomeKI_10:33056772..33057042 -
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:49953467..49953739 +
D10_09chromosomeD10_09:24476261..24476541 -
CM016622.1chromosomeCM016622.1:44502057..44502329 -
Dt_chr6chromosomeDt_chr6:1552686..1552976 -
At_chr6chromosomeAt_chr6:22897288..22897562 -
scaffold57268supercontigscaffold57268:280..570 +
A09chromosomeA09:41567275..41567549 +
Ghir_D09chromosomeGhir_D09:26680108..26680398 +
Ghir_A09chromosomeGhir_A09:46999774..47000048 +
D09chromosomeD09:26543224..26543514 +
A09chromosomeA09:49034789..49035063 +
A09chromosomeA09:48407467..48407741 +
D09chromosomeD09:24576868..24577158 +
A09chromosomeA09:45392392..45392666 +
Gbar_D09chromosomeGbar_D09:25252302..25252590 +
Gbar_A09chromosomeGbar_A09:43968324..43968597 +
D09chromosomeD09:28121438..28121728 +
A09chromosomeA09:45114818..45115091 +
CM017631.1chromosomeCM017631.1:25647423..25647707 +
CM017618.1chromosomeCM017618.1:44475116..44475387 +
CM017657.1chromosomeCM017657.1:26722205..26722507 +
CM017644.1chromosomeCM017644.1:47108518..47108790 +
CM017709.1chromosomeCM017709.1:26132609..26132899 +
CM017696.1chromosomeCM017696.1:44991944..44992217 +
CM017696.1chromosomeCM017696.1:44937898..44938171 +
D09chromosomeD09:27638245..27638535 +
A09chromosomeA09:49513819..49514093 +
Chr09chromosomeChr09:50940830..50941102 +
Chr09chromosomeChr09:24698363..24698637 +
Chr06chromosomeChr06:24055370..24055648 -
chr06chromosomechr06:16343169..16343463 -
Chr_06chromosomeChr_06:14322033..14322372 -
Chr06chromosomeChr06:26063623..26063893 +
Chr06chromosomeChr06:11209555..11209836 -
Chr06chromosomeChr06:13846488..13846883 -
E09chromosomeE09:37491854..37492131 -
F09chromosomeF09:38690818..38691090 +
Chr09chromosomeChr09:66328468..66328739 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch23_Dt.09N/A14.3PGML0001View
2Yumian-1 x 7235, RIL (2015)AD_ch23_Dt.09N/A29PGML001View
Sequence
>PGML0001 ID=PGML0001; Name=PGML0001; organism=Gossypium raimondii; type=genetic_marker; length=275bp
TGCACAATGTAGCACCTTCTCTAATGCTCTGAATTGAGTCATTCAACATG
TGTAAAATCTGGGGAAAAAATAGAGAAGAAAACACACACACACACAATGA
GCATAAAAAAGAAGATATTCCCGAAGGGAATGATATGGGAGAGTTATTTA
TTCCTAACCACCAGTCCCTATGGACATACCGGAGGAAGAATAGCCTTCAT
GAACTCCATCGACGTAAAAACAGTGATAGCAGAAGTGACAGTCCTCATAA
ACTCTTCAAGAACTCTCGGGCTGTT