HAU3284, HAU3284 (genetic_marker) gossypium spp

Marker Overview
NameHAU3284
Genbank IDGR716890
TypeSSR
SpeciesGossypium spp.
Source SequenceGR711441.1
Source TypeEST
Repeat Motif(TTA)7
PCR ConditionAnnealing temperature: 56.5
Primer 1HAU3284_F: GGGTTTTGTTGGGCCAGGGA
Primer 2HAU3284_R: GCCCAATTTTTGTCCGGGCT
Product Length188
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGR716890
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:74137033..74137219 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:12948090..12948271 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:83996489..83996676 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
At_chr2chromosomeAt_chr2:44185946..44186133 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold12448supercontigscaffold12448:52..239 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:71609642..71609829 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:12513509..12513690 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:87732943..87733130 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:12440162..12440343 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:88715741..88715928 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:86351297..86351484 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:12985619..12985800 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:84144920..84145107 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At01chromosomeAt01:56040504..56040691 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10730supercontigscaffold10730:330792..330979 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A01chromosomeGbar_A01:86402571..86402758 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:86444459..86444646 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017688.1chromosomeCM017688.1:82561536..82561727 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:13051006..13051187 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:89640581..89640768 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
F08chromosomeF08:80786169..80786359 +Gossypium longicalyx (F1) genome NSF_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GR711441.1GR711441.1Gossypium spp.sequence_feature


Sequence
>HAU3284 ID=HAU3284; Name=HAU3284; organism=Gossypium spp.; type=genetic_marker; length=188bp
GGGTTTTGTTGGGCCAGGGATTAAGGTTGGGTTTGGGTTGTTGGGGTTAG
GTTTAATTTAGGTTTATTTGACTTGTTTAATAGAGCATAAATTTGGACTT
TGGGCTTTATTATTATTATTATTATTATTTATTTTATATTTTGATTTTTT
TTTTGGTTTTTTTGTATAAGCCCGGACAAAAATTGGGC