HAU3063, HAU3063 (genetic_marker) gossypium spp

Marker Overview
NameHAU3063
Genbank IDES810212
TypeSSR
SpeciesGossypium spp.
Source SequenceES810212.1
Source TypeEST
Repeat Motif(GTTTT)5
PCR ConditionAnnealing temperature: 56.3
Primer 1HAU3063_F: ACCACTCTAGCAGCAAACAGGA
Primer 2HAU3063_R: TCTACCATTGCCGCCACCAC
Product Length241
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankES810212
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:27599841..27600082 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:26689895..26690136 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:25051218..25051458 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_07chromosomeKI_07:23087768..23088003 +Gossypioides kirkii genome ISU_v3n/a
tig00003336_CRI-A2_v1.0.a1chromosometig00003336_CRI-A2_v1.0.a1:21020..21261 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:28148335..28148577 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:77706053..77706291 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr1chromosomeDt_chr1:20662360..20662599 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:61374709..61374950 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:26454198..26454439 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:37701467..37701706 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:27115290..27115531 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:26453415..26453656 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:27148259..27148500 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:26609712..26609952 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt07chromosomeDt07:30260432..30260673 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7815supercontigscaffold7815:57620..57861 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7815supercontigscaffold7815:42916..43162 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7815supercontigscaffold7815:40012..40253 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11982supercontigscaffold11982:49364..49605 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11982supercontigscaffold11982:51708..51949 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:26878028..26878269 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:26972026..26972267 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:37386698..37386939 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:27157806..27158047 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:27374706..27374942 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:27191385..27191626 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:27424612..27424853 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:27196836..27197076 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:27042720..27042952 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:23007290..23007535 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:20745296..20745538 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:26269890..26270132 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:17478514..17478755 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:21064910..21065230 -Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:49713433..49713675 +Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:34209965..34210205 -Gossypium longicalyx (F1) genome NSF_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
ES810212.1ES810212.1Gossypium spp.sequence_feature


Sequence
>HAU3063 ID=HAU3063; Name=HAU3063; organism=Gossypium spp.; type=genetic_marker; length=241bp
ACCACTCTAGCAGCAAACAGGAAGCATAAAAAAAGTTAAAAAAAAATTAA
CCTAAAATATATACCCATGCCTCAATATGATACCTTATGGCCAAAGTACA
GAAAATTATCCCATATATGTAGTATTAAATAGAGTGAAATGCTAGCTTGC
ATATGGGGTTTTGTTTTGTTTTGTTTTGTTTTGGAGATGCATATATATAG
TTTAACTTGCACCTGTTGGTGGTGGTGGCGGCAATGGTAGA