HAU2931, HAU2931 (genetic_marker) gossypium spp

Marker Overview
NameHAU2931
Genbank IDES810395
TypeSSR
SpeciesGossypium spp.
Source SequenceES810395.1
Source TypeEST
Repeat Motif(CAAGTC)3
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU2931_F: TGGCGATGCTCTTGCTGATGA
Primer 2HAU2931_R: CTCCCCCAAGCCGTTGTACG
Product Length185
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankES810395
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:18823394..18823578 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:20622901..20623079 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:17868887..17869071 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:19988535..19988713 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:16750241..16750419 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:15056771..15056949 +Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:20247588..20247766 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:43567392..43567570 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:30224140..30224318 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:53543756..53543940 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:42982914..42983092 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:18151810..18151994 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:18738770..18738948 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:18332920..18333104 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:20404543..20404721 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D01chromosomeGhir_D01:20546442..20546620 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:27120010..27120188 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:17929237..17929421 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:19807828..19808006 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:18168425..18168609 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:20416435..20416613 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:18046192..18046376 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:20580108..20580286 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt05chromosomeDt05:18717891..18718075 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt01chromosomeDt01:20410911..20411089 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At01chromosomeAt01:30066362..30066540 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9635supercontigscaffold9635:321530..321708 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7787supercontigscaffold7787:202609..202793 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5450supercontigscaffold5450:95025..95203 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold35127supercontigscaffold35127:46446..46624 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1781supercontigscaffold1781:499624..499802 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:18219064..18219248 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:19568764..19568942 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D01chromosomeGbar_D01:20624447..20624625 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:26527813..26527991 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:18221854..18222038 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:20266701..20266879 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:18061821..18062005 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:20032126..20032304 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:18520054..18520238 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:20461804..20461982 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:18209747..18209931 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:19784061..19784239 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:18641841..18642025 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:20724683..20724861 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:21580039..21580217 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:20170143..20170321 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:16825751..16825926 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:66267574..66267752 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:17425873..17426051 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_09chromosomeChr_09:14588392..14588570 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:17921822..17922000 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:42015094..42015272 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:12885002..12885180 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:14944872..14945050 +Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:21608600..21608778 +Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:17289325..17289503 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:170499776..170499951 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
ES810395.1ES810395.1Gossypium spp.sequence_feature


Sequence
>HAU2931 ID=HAU2931; Name=HAU2931; organism=Gossypium spp.; type=genetic_marker; length=185bp
TGGCGATGCTCTTGCTGATGATGTTCACTTTATCATCAGCTCTCGACATG
TCGATCATATCCTACGATGAAGGCCATCCCGACAAGTCCAAGTCCAAGTC
CAGTTGGAGAACAGACGACGAGGTTATGGTCATGTACGAGGAGTGGCTTG
TGAAGCATGGAAAAGCGTACAACGGCTTGGGGGAG