HAU0860, HAU0860 (genetic_marker) gossypium spp

Marker Overview
NameHAU0860
Genbank IDCO129678
TypeSSR
SpeciesGossypium spp.
Source SequenceCO129678
Source TypeEST
Repeat Motif(TTC)6
PCR ConditionAnnealing temperature: 56.8
Primer 1HAU0860_F: ATGGCCTCAGCTAAGAAAAA
Primer 2HAU0860_R: GGTTTGAGGCCTTGTAAAGA
Product Length279
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO129678
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:41355136..41355999 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:41873631..41874495 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:35778766..35779630 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_02chromosomeD10_02:40178992..40179859 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr3chromosomeDt_chr3:10230306..10231169 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Ghir_D03chromosomeGhir_D03:41263306..41264169 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:42738528..42739391 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:42186799..42187662 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:41639902..41640765 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4170supercontigscaffold4170:506670..507534 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:40289003..40289867 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:42804965..42805829 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:41215729..41216593 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:45194710..45195574 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:42802463..42803327 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:43295663..43296526 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:37866275..37867135 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:39164741..39165604 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:25766823..25767688 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:21928172..21929138 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:41245142..41246007 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:22398527..22399419 +Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:19148876..19149739 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr03chromosomeChr03:23896906..23897974 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr03chromosomeHAU0860:2..781 .
Chr03:35276790..35278293 +		n/a
Chr9chromosomeHAU0860:2..781 .
Chr9:13908128..13909631 +		n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO129678CO129678Gossypium spp.sequence_feature


Sequence
>HAU0860 ID=HAU0860; Name=HAU0860; organism=Gossypium spp.; type=genetic_marker; length=279bp
ATGGCCTCAGCTAAGAAAAAGACGACGCTTCATTCTTCTTCATCTTCTTC
CCCTTCTTCATGTTGCGCATCGCACTCCGTTGTTTCCGCCGCGCCTCCTG
CTTCTTCATCTGCCTCCGCCACCGCCTCCAATCTGCTGCACGAGTGGACC
CTCGGTTCTACGGATCGCCGCGACGATAGCAGCGCCACCAAAGCTGCCAT
GGCGTCCTTGATTCGCCCCGTTGATTCTCTTCCCGATACTTCCACCAAAG
GCATCCAAATCTTTACAAGGCCTCAAACC