HAU0813, HAU0813 (genetic_marker) gossypium spp

Marker Overview
NameHAU0813
Genbank IDCO114248
TypeSSR
SpeciesGossypium spp.
Source SequenceCO114248
Source TypeEST
Repeat Motif(AAAGC)4
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0813_F: GTATCACATTGCTGGTCCAA
Primer 2HAU0813_R: CATTTTATGCATGTCCTCCA
Product Length137
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO114248
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:60379991..60380127 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A13chromosomeA13:100085506..100085642 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:56124002..56124138 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:103971944..103972080 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:55197952..55198088 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_13chromosomeKI_13:39997565..39997701 +Gossypioides kirkii genome ISU_v3n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:119388120..119388256 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:56948089..56948225 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:154672386..154672522 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold626.1supercontigscaffold626.1:377108..377244 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr13chromosomeAt_chr13:24312384..24312520 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold178217supercontigscaffold178217:126..262 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D13chromosomeD13:56237860..56237996 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:76149939..76150075 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:59333453..59333589 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:103933681..103933817 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:60272854..60272990 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:106141870..106142006 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:59511650..59511786 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:104395950..104396086 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:56160035..56160171 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:102897532..102897668 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8217supercontigscaffold8217:199978..200114 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7700supercontigscaffold7700:350376..350512 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:55923589..55923725 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:104849304..104849440 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:57049431..57049567 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:108355323..108355459 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:56908070..56908206 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:105973744..105973880 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:60172508..60172644 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:111079108..111079244 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:56733894..56734030 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:106063573..106063709 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:60624094..60624230 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:107125799..107125935 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:113155555..113155691 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:117734219..117734355 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:55178180..55178316 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:6098597..6098733 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:56341798..56341934 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:41761531..41761667 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:40315565..40315701 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:59190335..59190471 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:39124025..39124161 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:30405182..30405318 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:38162954..38163090 +Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:109737774..109737910 +Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:91526493..91526629 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:3740234..3740370 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO114248CO114248Gossypium spp.sequence_feature


Sequence
>HAU0813 ID=HAU0813; Name=HAU0813; organism=Gossypium spp.; type=genetic_marker; length=137bp
GTATCACATTGCTGGTCCAAGGCTCTCATGATTCATGATATTAATATATA
AAAAACCGAATCAGAAAGCAAAGCAAATGCAAAGATTCAGCATTCACATG
ATGGGGTTCTTATACTGTGGAGGACATGCATAAAATG