HAU0575, HAU0575 (genetic_marker) gossypium spp

Marker Overview
NameHAU0575
Genbank IDCK640498
TypeSSR
SpeciesGossypium spp.
Source SequenceCK640498
Source TypeEST
Repeat Motif(TGA)8
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0575_F: TAAGGATTTCGGATCTGCTC
Primer 2HAU0575_R: CCCTGTTGATCTTTTGCTTT
Product Length211
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCK640498
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:64445424..64446385 -
CM018202.1chromosomeCM018202.1:113090788..113091760 +
D5_01chromosomeD5_01:56613656..56614616 -
scaffold2616.1supercontigscaffold2616.1:21977..22949 +
scaffold4398.1supercontigscaffold4398.1:34671..35632 -
D01chromosomeD01:64670087..64671048 -
A01chromosomeA01:118129825..118130797 -
Gbar_A01chromosomeGbar_A01:115603870..115604831 -
A01chromosomeA01:115593830..115594802 -
CM017623.1chromosomeCM017623.1:63926687..63927648 -
CM017610.1chromosomeCM017610.1:114124317..114125294 -
CM017649.1chromosomeCM017649.1:65614207..65615181 -
Chr01chromosomeChr01:52391978..52392939 -
Chr02chromosomeHAU0575:1..675 .
Chr02:62736054..62737484 -
Chr2chromosomeHAU0575:1..675 .
Chr2:26789..28217 +
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CK640498CK640498Gossypium spp.sequence_feature


Sequence
>HAU0575 ID=HAU0575; Name=HAU0575; organism=Gossypium spp.; type=genetic_marker; length=211bp
TAAGGATTTCGGATCTGCTCTGTGGGACATGATTAGGGGAAAAGGAACAG
GTTACTCTATGAAAGGTCACATCAACGTTGACACTCCGTTTGGAGCAATG
AAATTACCCATCAGCAAGGAGGGTGGCACAACCCGCCTTAAGAAGAATAG
GGAAGACGGTGGTGATGATGATGATGATGATGATGAGGATTAAAGCAAAA
GATCAACAGGG