HAU0347, HAU0347 (genetic_marker) gossypium spp

Marker Overview


Name	HAU0347
Genbank ID	BF268943
Type	SSR
Species	Gossypium spp.
Source Sequence	BF268943
Source Type	EST
Repeat Motif	(TC)7＋(TTA)5
PCR Condition	Annealing temperature: 57.2
Primer 1	HAU0347_F: TTCTATGTCTTCGCCTCTCC
Primer 2	HAU0347_R: GGTATCAGCGAAGGAATCTG
Product Length	262
Publication	[view all]
Comment	Primer data obtained in 2012

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	BF268943

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
CM018212.1	chromosome	CM018212.1:89699415..89699668 +	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
Chr11_CRI-A2_v1.0.a1	chromosome	Chr11_CRI-A2_v1.0.a1:27673042..27673308 -	Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1	n/a
scaffold16101	supercontig	scaffold16101:89728..89981 -	Gossypium barbadense (AD2) '3-79' genome HAU_v1	n/a
Gbar_A11	chromosome	Gbar_A11:87848967..87849220 +	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
A11	chromosome	A11:91057416..91057669 +	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017698.1	chromosome	CM017698.1:89960836..89961091 +	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
Chr11	chromosome	Chr11:102620066..102620348 +	Gossypium herbaceum (A1) 'Mutema' genome WHU_v1	n/a
Chr11	chromosome	Chr11:100869698..100869964 +	Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1	n/a

Publications


Year	Publication
2011	Yu Y, Yuan D, Liang S, Li X, Wang X, Lin Z, Zhang X. Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense. BMC genomics. 2011; 12:15

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
BF268943	BF268943	Gossypium spp.	sequence_feature

Sequence

>HAU0347 ID=HAU0347; Name=HAU0347; organism=Gossypium spp.; type=genetic_marker; length=262bp
TTCTATGTCTTCGCCTCTCCCTATTTCACCTGTCCCACCACCAAACCCCA
AACAGCTCTCTCTCTGTGTCTCTCTTTCTCTCTATACCGCACTTTCTGGG
ACTATCCGCTCCGTTTTCTTTATTATTATTATTATATCTTCATCCTAGAA
TTTTATATTCTATTTAAATTCTTCACTTTCACGCTATAAATCCGCTCTCC
GTTTCACTCCCTTTCCCCTTCCTCTCTCTCTTCTCTTTGCCACAGATTCC
TTCGCTGATACC

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HAU0347, HAU0347 (genetic_marker) gossypium spp