HAU0331, HAU0331 (genetic_marker) gossypium spp

Marker Overview
NameHAU0331
Genbank IDBE054167
TypeSSR
SpeciesGossypium spp.
Source SequenceBE054167
Source TypeEST
Repeat Motif(TG)8
PCR ConditionAnnealing temperature: 57.2
Primer 1HAU0331_F: AGCCATGGTTCATTAGGTGT
Primer 2HAU0331_R: TGGCAGTAACACAACAAAGC
Product Length121
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBE054167
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:103058773..103058887 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:112172840..112172954 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:98468992..98469110 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:766356..766480 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr9chromosomeAt_chr9:41556956..41557070 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:99077507..99077621 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:62434535..62434631 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:49523948..49524054 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:116825645..116825759 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:117168041..117168155 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:115082592..115082706 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:111675001..111675115 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At01chromosomeAt01:82845144..82845258 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At01chromosomeAt01:82837411..82837523 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17339supercontigscaffold17339:18791..18903 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17779supercontigscaffold17779:38222..38336 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17779supercontigscaffold17779:30489..30601 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1450supercontigscaffold1450:93241..93345 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:62142579..62142691 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:47327360..47327464 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:114698144..114698258 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:114699861..114699975 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:63150416..63150528 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:113218659..113218773 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:64705751..64705877 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:120763702..120763814 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:110870507..110870621 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:118757157..118757271 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:121958817..121958937 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:949623..949741 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:51616907..51617017 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:97197286..97197402 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:60579202..60579338 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_02chromosomeChr_02:41189061..41189173 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:61477901..61478027 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:45253608..45253730 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:35568406..35568524 -Gossypium gossypioides (D6) genome ISU_v1n/a
F01chromosomeF01:97691319..97691437 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:764971..765085 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BE054167BE054167Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch15_Dt.01N/A157.23HAU0331View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A0HAU0331View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch07_At.07N/A82HAU0331View
Sequence
>HAU0331 ID=HAU0331; Name=HAU0331; organism=Gossypium spp.; type=genetic_marker; length=121bp
AGCCATGGTTCATTAGGTGTTTTGCTTCTTGTATCCATGGTTGCTTGGTT
TGTGTATGTGTGTGTGTGTGTATATATAGTGAAATGAAATTATTTTAACT
AGCTTTGTTGTGTTACTGCCA