HAU0323, HAU0323 (genetic_marker) gossypium spp

Marker Overview
NameHAU0323
Genbank IDBE052698
TypeSSR
SpeciesGossypium spp.
Source SequenceBE052698
Source TypeEST
Repeat Motif(GAA)8
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU0323_F: TGTCGAAGGAGAGTGAGTGA
Primer 2HAU0323_R: CGGTGCAGTAAACAAGAATG
Product Length268
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBE052698
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:121508..121774 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A01chromosomeA01:188476..188742 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:110175..110441 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:53165..53431 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:155566..155832 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:151460..151726 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:60299128..60299394 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:346107..346373 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1755.1supercontigscaffold1755.1:206906..207172 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold280.1supercontigscaffold280.1:116662..116928 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:103743..104009 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:126583..126849 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:148245..148511 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:146112..146378 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:124292..124558 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:113017..113283 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:169392..169658 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:128943..129209 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:160395..160661 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt01chromosomeDt01:175217..175483 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold14313supercontigscaffold14313:211460..211726 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13861supercontigscaffold13861:49959..50225 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:152279..152545 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:37708..37974 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:130057..130323 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:131546..131812 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:143216..143482 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:157563..157829 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:145758..146024 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:116142..116408 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:139381..139647 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:160975..161241 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:99137..99403 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:159365..159631 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:87098..87364 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:84348..84614 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:135228..135494 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:148515..148781 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:137084..137350 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_02chromosomeChr_02:91939..92201 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:332001..332267 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:82959..83225 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:82022..82288 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:90488..90750 -Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:160881..161147 -Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:128800..129066 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:199745627..199745893 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BE052698BE052698Gossypium spp.sequence_feature


Sequence
>HAU0323 ID=HAU0323; Name=HAU0323; organism=Gossypium spp.; type=genetic_marker; length=268bp
TGTCGAAGGAGAGTGAGTGAATAAGGGGTGAGCCGAACGGACTATGTGGA
TCCTCCACCGGCACCGCTCATCGACGTGGCTGATATCAAGCTTTGGTCTT
TTTACAGAGCTCTTATCGCCGAATTCATCGCTACTCTACTTTTCCTATAC
GTCACCATAGCCACCGTCGTCGGCCACAAGAAACAACACGATGCATGCGA
TGGTGTTGGTCTTTTGGGCATTGCTTGGGCTTTGGGTGGCCTGATCCTCA
TTCTTGTTTACTGCACCG