MUSS0500, MUSS0500 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUSS0500
AliasMUSS500
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifTAG(5)
PCR ConditionAnnealing temperature: 55
Primer 1MUSS500_F: TGCTACGCACAACCACTCC
Primer 2MUSS500_R: ACATGTTTCTGAGGCCAACC
Product Length235
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:87778851..87779085 .Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1CottonGen marker alignment to genome using primer sequences
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)AD_ch24_Dt.08N/A56.58MUSS500View
2Guazuncho-2 x VH8-4602, RIL (2009)AD_ch24_Dt.08N/A45.77MUSS500View
3TM-1 x 3-79, RIL (2006)AD_ch08_At.08N/A101.8MUSS500View
4TM-1 x 3-79, RIL (2012)AD_ch24_Dt.08N/A54.86MUSS500View
5TM-1 x 3-79, RIL (2014)AD_ch24_Dt.08N/A60MUSS500View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A79.3MUSS500View
7AD-genome wide Reference Map (2009)AD_ch08_At.08N/A7muss0500View
8TM-1 x 3-79, RIL (2012.v3)AD_ch24_Dt.08N/A60.9MUSS500View
9PD 94042 x (AD)4-08, F2 (2016)AD_ch24_Dt.08N/A41.4MUSS500View