USDA_SNP0465, USDA_SNP0465 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0465
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00111Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr02chromosomeChr02:60215184..60215184 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018215.1chromosomeCM018215.1:60105542..60105604 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:54047915..54047977 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold238.1supercontigscaffold238.1:924161..924223 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:58751005..58751067 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:60475029..60475091 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:62008259..62008321 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:61888746..61888808 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:58658531..58658593 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:60354555..60354617 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:60997590..60997652 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:61260193..61260255 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:62804870..62804932 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:60758861..60758923 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:62378103..62378165 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:49851959..49852021 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:58726867..58726929 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:44977678..44977740 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr02chromosomeChr02:59564844..59564906 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
F01chromosomeF01:95891613..95891675 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0465 ID=USDA_SNP0465; Name=USDA_SNP0465; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTTCTTTC[A/G]TTGAAGTTTAGCCACTAGTTGCCAAGCAGGTTA
AGCCACCAAAGGGTCAT