UCD_Gh_M_000553, UCD_Gh_M_000553 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000553
AliasGh_M_000553
Tm1_Mira454_Contig_2425_1601
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceAGAACTCCACAACCTCCATGAAGTCCTGCTTTGCTTCATCAACTCCAGCAACATCATCAA ATGTTACACCGGTGTTGGGTTCCATTTGAAACTTTGCTTT
3' Flanking SequenceGATTGACCAAAAGCAAGGGGAAAACCAGGCCCACCCGGACCTCCCATTCCACCAGAGGAT CTCCTTGAAAGAAGGAACAACCCTCCAATCAAGATTAATG
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018202.1chromosomeCM018202.1:1893207..1893407 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:1886027..1886227 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
A01chromosomeA01:1645794..1645994 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A01chromosomeGhir_A01:2158865..2159065 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A01chromosomeA01:2087592..2087792 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A01chromosomeA01:2197108..2197308 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A01chromosomeA01:2148852..2149052 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A01chromosomeGbar_A01:1864762..1864962 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A01chromosomeA01:1886343..1886543 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017610.1chromosomeCM017610.1:2422489..2422689 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017636.1chromosomeCM017636.1:1922689..1922889 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017688.1chromosomeCM017688.1:1949998..1950198 +Gossypium darwinii (AD5) genome HGS_v1.1
A01chromosomeA01:2194397..2194597 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr01chromosomeChr01:1901421..1901621 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr01chromosomeChr01:1819066..1819266 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
B_01chromosomeB_01:1979338..1979538 +Gossypium anomalum (B1) genome NSF_v1
Chr02_6325532chromosomeChr02_6325532:4019..4219 +Gossypium lobatum (D7) genome ISU_v1
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000553 ID=UCD_Gh_M_000553; Name=UCD_Gh_M_000553; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
AGAACTCCACAACCTCCATGAAGTCCTGCTTTGCTTCATCAACTCCAGCA
ACATCATCAAATGTTACACCGGTGTTGGGTTCCATTTGAAACTTTGCTTT
[C/T]GATTGACCAAAAGCAAGGGGAAAACCAGGCCCACCCGGACCTCCC
ATTCCACCAGAGGATCTCCTTGAAAGAAGGAACAACCCTCCAATCAAGAT
TAATG