UCD_Gh_M_000451, UCD_Gh_M_000451 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000451
AliasGh_M_000451
Tm1_Mira454_Contig_1970_836
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
5' Flanking SequenceGTCCGTGGTTGAGGCCCGACGGTAAGACCCAAGTGACTGTCGAGTATCAAAATGATGGTG GAGCCATGGTCCCTGTTCGTGTTCATACTGTTCTCATTTC
3' Flanking SequenceACTCAACACGATGAGACTGTTACCAATGAGAAGATTGCAGCGGACTTGAAAGAGCATGTC ATTAAGCCTGTTATTCCGGCAAAGTACCTTGATGACAAAA
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018225.1chromosomeCM018225.1:69149946..69150146 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr12chromosomeDt_chr12:5079564..5079764 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:65696406..65696606 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:72455118..72455318 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:70868967..70869167 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:72059315..72059515 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:68782233..68782433 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold3329supercontigScaffold3329:424647..424847 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:71837618..71837818 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:70370710..70370910 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:73107563..73107763 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:68663984..68664184 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:72378279..72378479 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
B_11chromosomeB_11:101849419..101849619 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:69207457..69207657 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr07chromosomeChr07:71342025..71342225 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000451 ID=UCD_Gh_M_000451; Name=UCD_Gh_M_000451; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
GTCCGTGGTTGAGGCCCGACGGTAAGACCCAAGTGACTGTCGAGTATCAA
AATGATGGTGGAGCCATGGTCCCTGTTCGTGTTCATACTGTTCTCATTTC
[C/G]ACTCAACACGATGAGACTGTTACCAATGAGAAGATTGCAGCGGAC
TTGAAAGAGCATGTCATTAAGCCTGTTATTCCGGCAAAGTACCTTGATGA
CAAAA