UCD_Gh_M_000445, UCD_Gh_M_000445 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000445
AliasGh_M_000445
Tm1_Mira454_Contig_1962_599
dbSNP IDN/A
TypeSNP
SNP AllelesA/C
5' Flanking SequenceGTTCATATTGGTGGAAATTGTTCAGGGACAATAAAATGACTGTAACCAGACCTTACATGA TCGAGATCATGTACTCGAAACATGTCCAGATATCGAATCT
3' Flanking SequenceACGTTGGTTAACTCCCCATCATGGAACGTTCATCCCATATACAGCAGTGATATAATAATC CAACACTTAACGGTTTTTGCACCGGTTGATTCTCCCAACA
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:57957583..57957783 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:1820475..1820674 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:52858509..52858709 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr8chromosomeDt_chr8:55663949..55664149 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:57401542..57401742 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:60721550..60721750 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:59879669..59879869 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:60781452..60781652 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:57188605..57188805 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:58979477..58979677 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:58867698..58867898 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:61803482..61803682 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:59495223..59495423 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:61303734..61303934 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:55919326..55919526 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:56383807..56384007 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr08chromosomeChr08:57959720..57959920 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08_6316678chromosomeChr08_6316678:1963..2163 +Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:112385577..112385777 -Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000445 ID=UCD_Gh_M_000445; Name=UCD_Gh_M_000445; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
GTTCATATTGGTGGAAATTGTTCAGGGACAATAAAATGACTGTAACCAGA
CCTTACATGATCGAGATCATGTACTCGAAACATGTCCAGATATCGAATCT
[A/C]ACGTTGGTTAACTCCCCATCATGGAACGTTCATCCCATATACAGC
AGTGATATAATAATCCAACACTTAACGGTTTTTGCACCGGTTGATTCTCC
CAACA