UCD_Gh_M_000281, UCD_Gh_M_000281 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000281
AliasGh_M_000281
Tm1_Mira454_Contig_1002_1008
dbSNP IDN/A
TypeSNP
SNP AllelesT/A
5' Flanking SequenceCATAAGCTTTCTTCAAAAGACCATTTCTTCTCTTTGCAAAAGTGACTTGCCTGTTGATCT TGTTTTCAATCCTCTTAAGTTCAACCCTACCTCTTCCCAT
3' Flanking SequenceAATTTTTTTTTATAATTTTTTCACTAAAAATCAATGAGAACCCAAACCCTAAAACCAACA ATCTTTCCCTTTTGAATTGTTTTGAGACCAAAAGGAAAAG
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018218.1chromosomeCM018218.1:53740917..53741117 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:558379..558579 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_04chromosomeD10_04:51930259..51930459 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr7chromosomeDt_chr7:2071264..2071463 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:50894826..50895025 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:55729582..55729781 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:55566640..55566839 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:53652928..53653127 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:51838497..51838697 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:56735967..56736168 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:53855519..53855719 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:56754970..56755169 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:53866222..53866422 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:57562140..57562339 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:560362..560562 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeChr12:53656673..53656873 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr12chromosomechr12:29194386..29194585 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_12chromosomeChr_12:23444301..23444502 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:53651459..53651659 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:27707093..27707292 +Gossypium aridum (D4) genome ISU_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000281 ID=UCD_Gh_M_000281; Name=UCD_Gh_M_000281; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
CATAAGCTTTCTTCAAAAGACCATTTCTTCTCTTTGCAAAAGTGACTTGC
CTGTTGATCTTGTTTTCAATCCTCTTAAGTTCAACCCTACCTCTTCCCAT
[A/T]AATTTTTTTTTATAATTTTTTCACTAAAAATCAATGAGAACCCAA
ACCCTAAAACCAACAATCTTTCCCTTTTGAATTGTTTTGAGACCAAAAGG
AAAAG