UCD_Gh_Gh_Genomic_878062, UCD_Gh_Gh_Genomic_878062 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_Gh_Genomic_878062
AliasUC_Gh_Gh_Genomic_878062
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i49377Gh
TypeSNP
SNP AllelesT/G
5' Flanking SequenceGTTAGGTAATAGGGTGTTACAATATCACTTATACAAGTTTTCTCAATTTA
3' Flanking SequenceAAGGAATCGAGACTTGCTAACATAGTATATCTATTACAATAAATCTTCCT
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05chromosomeChr05:57222696..57222696 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018204.1chromosomeCM018204.1:97722867..97722967 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:127082204..127082304 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:33145033..33145133 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:92403497..92403597 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:104355944..104356044 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:103330230..103330330 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:101432903..101433003 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:96681134..96681234 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:96894192..96894292 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:99145938..99146038 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:98511037..98511137 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:105677306..105677406 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:61335067..61335166 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:99543748..99543848 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:105005790..105005890 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:8715427..8715527 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:8612777..8612877 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_03chromosomeB_03:8669256..8669355 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:40390989..40391086 +Gossypium lobatum (D7) genome ISU_v1n/a
F03chromosomeF03:102700784..102700882 +Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch03_At.03N/A59.73SNPi49377GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch03_At.03N/A52.77i49377GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch03_At.03N/A52.9i49377GhView
4DS-28 x SBYF-425, RIL (2022)AD_ch03_At.03N/A86.08i49377GhView
Sequence
>UCD_Gh_Gh_Genomic_878062 ID=UCD_Gh_Gh_Genomic_878062; Name=UCD_Gh_Gh_Genomic_878062; organism=Gossypium hirsutum; type=genetic_marker; length=105bp
GTTAGGTAATAGGGTGTTACAATATCACTTATACAAGTTTTCTCAATTTA
[G/T]AAGGAATCGAGACTTGCTAACATAGTATATCTATTACAATAAATC
TTCCT