TAMU_GH_TBr166G08r431, TAMU_GH_TBr166G08r431 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBr166G08r431
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i47972Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:11857762..11857862 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:13313874..13313974 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:12271733..12271833 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold6856supercontigscaffold6856:6549..6649 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold39575supercontigscaffold39575:328..428 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:11632796..11632896 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:12374993..12375093 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:11970021..11970121 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:12271845..12271945 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:12114330..12114430 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:12003413..12003513 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:12022090..12022190 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:12984951..12985051 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:12308295..12308395 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:12120120..12120220 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:12274436..12274536 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:11914081..11914181 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:13203859..13203959 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch01_At.01N/A77.27SNPi47972GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch01_At.01N/A97.67i47972GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch01_At.01N/A73.1i47972GhView
Sequence
>TAMU_GH_TBr166G08r431 ID=TAMU_GH_TBr166G08r431; Name=TAMU_GH_TBr166G08r431; organism=Gossypium sp.; type=genetic_marker; length=105bp
AGGAATTATTCTTCTGTTGGGGTAGGTGACTGAGTGTTTTAGTGTTGTGA
[A/C]CATATTCTATAATCAAGTAAGGGTCGGTTTTGTTTTGGAATTGAT
GTGTT