TAMU_GH_TBh087J03r465, TAMU_GH_TBh087J03r465 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh087J03r465
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i43830Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018203.1chromosomeCM018203.1:3772200..3772300 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:4188562..4188662 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold4155.1supercontigscaffold4155.1:12723..12823 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:3739077..3739177 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:3815233..3815333 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:3670721..3670821 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:3930573..3930673 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:3833387..3833487 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A02chromosomeGbar_A02:3750442..3750542 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:3741113..3741213 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:3824996..3825096 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:3851884..3851984 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:3800804..3800904 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:3978526..3978626 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:127780021..127780121 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:126860853..126860953 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch02_At.02N/A90.05SNPi43830GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch02_At.02N/A103.05i43830GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch02_At.02N/A77.7i43830GhView
Sequence
>TAMU_GH_TBh087J03r465 ID=TAMU_GH_TBh087J03r465; Name=TAMU_GH_TBh087J03r465; organism=Gossypium sp.; type=genetic_marker; length=105bp
CCGAAAAAGTAGTTAATTAAAGCTCAGGGATTGAATTGTAAAAGTCTAAT
[C/T]ACTATTGAGTTTTAATTGAGAAAAGGCTTGGGGACCTAAATAGCA
ATTAT