TAMU_GH_TBh084C12f496, TAMU_GH_TBh084C12f496 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh084C12f496
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i43468Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05chromosomeChr05:2766274..2766274 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018216.1chromosomeCM018216.1:2568647..2568747 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:60771488..60771588 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_03chromosomeD10_03:63770096..63770196 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold1051.1supercontigscaffold1051.1:81149..81249 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:3176274..3176374 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:3013497..3013597 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:2793192..2793292 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:3077199..3077299 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:3019981..3020081 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:3414560..3414660 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:2915869..2915969 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:3074849..3074949 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:3307710..3307810 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:16093897..16093996 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:2695961..2696061 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:3084948..3085048 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:2755762..2755862 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:2999441..2999541 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr05chromosomeChr05:3403441..3403541 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch14_Dt.02N/A11.08i43468GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch14_Dt.02N/A11.08i43468GhView
Sequence
>TAMU_GH_TBh084C12f496 ID=TAMU_GH_TBh084C12f496; Name=TAMU_GH_TBh084C12f496; organism=Gossypium sp.; type=genetic_marker; length=105bp
ATAAATCTCAAATGTTTCCAATACTTGCAAAGATGGCTCGAGATTTCCTC
[A/G]CGATTCCAGTATCAATTTTCATACCATGTTCAAATATTAAGGCCA
CGATC