TAMU_GH_TBh046C04f766, TAMU_GH_TBh046C04f766 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh046C04f766
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i39896Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018204.1chromosomeCM018204.1:85167911..85167985 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:112613638..112613712 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr5chromosomeAt_chr5:23528560..23528634 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:79454956..79455030 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:91145354..91145428 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:90347036..90347110 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:88203916..88203990 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:83532787..83532861 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:84516500..84516574 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:86611115..86611189 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:86266028..86266102 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:86576770..86576844 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:91677815..91677889 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:22876887..22876961 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:22219733..22219807 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch03_At.03N/A67.44i39896GhView
20-153 x sGK9708, RIL (2017)AD_ch03_At.03N/A51i39896GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch03_At.03N/A67.44i39896GhView
43-79 x TM-1, F2 (2015 SNP)AD_ch03_At.03N/A72.41i39896GhView
Sequence
>TAMU_GH_TBh046C04f766 ID=TAMU_GH_TBh046C04f766; Name=TAMU_GH_TBh046C04f766; organism=Gossypium sp.; type=genetic_marker; length=79bp
GGGACTACCTTTGTCCCTAATTATCTTTTTGAGTTTTTTTGACTCTTTCG
[A/G]GTTTCATTTAATTTTTCCTCCACT