TAMU_GH_TBb092L11f286, TAMU_GH_TBb092L11f286 (genetic_marker) Gossypium barbadense

Marker Overview
NameTAMU_GH_TBb092L11f286
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
SpeciesGossypium barbadense
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:57139272..57139372 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:53726914..53727014 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:5961216..5961316 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:48775772..48775872 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr8chromosomeDt_chr8:48911269..48911369 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:53647329..53647429 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:56064671..56064771 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:55381155..55381255 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:56152606..56152706 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:54332771..54332871 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:52737289..52737389 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:54528191..54528291 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:54455961..54456061 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:57351722..57351822 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:55047107..55047207 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:56520306..56520406 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:51778566..51778666 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:52084080..52084180 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:40303347..40303447 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:38524762..38524862 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:53732717..53732817 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:37436740..37436840 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:29159880..29159980 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:35832650..35832750 +Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:107058463..107058563 +Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>TAMU_GH_TBb092L11f286 ID=TAMU_GH_TBb092L11f286; Name=TAMU_GH_TBb092L11f286; organism=Gossypium barbadense; type=genetic_marker; length=105bp
CTTTCAACTTTTTCCTCGGCGGGCACGCCCTATCAACACGAATGTGATTC
[C/T]CTGCAATCTATATCCACGAACACAACAATATAATCAATATACAGT
ATCCT