TAMU_GH_TBb083K15r639, TAMU_GH_TBb083K15r639 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb083K15r639
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i31338Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr01chromosomeChr01:18871722..18871722 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D07chromosomeD07:20179351..20179451 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:19369448..19369548 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:18389039..18389139 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_07chromosomeD10_07:35413102..35413202 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:51452824..51452924 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:19228076..19228176 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:19845714..19845814 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:19050992..19051092 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:19813895..19813995 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:19367665..19367765 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:19809360..19809460 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:19428319..19428419 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:19777839..19777939 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:20073131..20073231 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:19701076..19701176 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:20028703..20028803 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:34516741..34516841 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr01chromosomechr01:16507556..16507656 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:15066676..15066776 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:19287809..19287909 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:15399609..15399709 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:12341609..12341709 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:14928793..14928893 -Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch16_Dt.07N/A57.63i31338GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch16_Dt.07N/A57.63i31338GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch16_Dt.07N/A64.4i31338GhView
Sequence
>TAMU_GH_TBb083K15r639 ID=TAMU_GH_TBb083K15r639; Name=TAMU_GH_TBb083K15r639; organism=Gossypium sp.; type=genetic_marker; length=105bp
GGTGAACGCCTATTAGTTTTGAACAAAATGACGTCGGTATCAACGCAATT
[A/G]CTATATTCCCATTGTAATTAAAGCATGTGTTATATAGTAATATAC
AACTA