TAMU_GH_TBb068G23r83, TAMU_GH_TBb068G23r83 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb068G23r83
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i29825Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:25132703..25132803 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:24114053..24114153 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:88023392..88023492 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:24868087..24868187 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:37857596..37857696 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:22117717..22117817 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:24698176..24698276 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:23984009..23984109 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:24743960..24744060 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:24877940..24878040 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:23843691..23843791 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:24481938..24482038 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:24331944..24332044 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:24658605..24658705 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:24037794..24037894 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:25132180..25132280 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:91002724..91002824 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:92359595..92359695 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:24768258..24768358 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch05_At.05N/A107.68SNPi29825GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch05_At.05N/A44.36i29825GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch05_At.05N/A44.36i29825GhView
4DS-28 x SBYF-425, RIL (2022)AD_ch05_At.05N/A20.66i29825GhView
53-79 x TM-1, F2 (2015 SNP)AD_ch05_At.05N/A119.29i29825GhView
6Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch05_At.05N/A101.1i29825GhView
Sequence
>TAMU_GH_TBb068G23r83 ID=TAMU_GH_TBb068G23r83; Name=TAMU_GH_TBb068G23r83; organism=Gossypium sp.; type=genetic_marker; length=105bp
TCTGAAAAACTGAAGCCCAATGTTATTCGGTGACATCCTTTGGCTATTCT
[C/T]TCTCAATATAGGCTTCCAATGGGGCGAAAGTTTTTGAAAACATGT
GGTAC