TAMU_GH_TBb042K13r371, TAMU_GH_TBb042K13r371 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb042K13r371
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i27231Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05chromosomeChr05:20529934..20529934 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D02chromosomeD02:23204611..23204711 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:21352325..21352425 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr5chromosomeDt_chr5:61979201..61979301 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:22763909..22764009 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:22260986..22261086 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:22269658..22269758 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:22167298..22167398 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:22191007..22191107 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:21777489..21777589 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:21830203..21830303 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:21959301..21959401 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:23053596..23053696 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:21562488..21562588 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:22633460..22633560 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:21915412..21915512 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch14_Dt.02N/A44.97i27231GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch14_Dt.02N/A44.97i27231GhView
33-79 x TM-1, F2 (2015 SNP)AD_ch14_Dt.02N/A92.84i27231GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch14_Dt.02N/A57.1i27231GhView
Sequence
>TAMU_GH_TBb042K13r371 ID=TAMU_GH_TBb042K13r371; Name=TAMU_GH_TBb042K13r371; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTAAAGGCTTGTAATCCTCCAGGGCTCTACTAGTTATAAAATCAGCTATT
[A/G]CACTCCCTTTCATGGCGTTCTGGCTCACATAGACTATGTCAAATT
CGGAA