TAMU_GH_TBb023B06r621, TAMU_GH_TBb023B06r621 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb023B06r621
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i25277Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:73349946..73350046 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018203.1chromosomeCM018203.1:82001271..82001371 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018203.1chromosomeCM018203.1:81983520..81983619 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:19564726..19564826 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr3chromosomeAt_chr3:68498547..68498647 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:68722984..68723084 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:89396950..89397050 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:89782618..89782718 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:87337089..87337189 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:85942853..85942953 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A02chromosomeGbar_A02:82329847..82329947 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:84132612..84132712 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:86011180..86011280 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017689.1chromosomeCM017689.1:83921607..83921707 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:89283813..89283913 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch02_At.02N/A60.75SNPi25277GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch02_At.02N/A52.61i25277GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch02_At.02N/A52.3i25277GhView
Sequence
>TAMU_GH_TBb023B06r621 ID=TAMU_GH_TBb023B06r621; Name=TAMU_GH_TBb023B06r621; organism=Gossypium sp.; type=genetic_marker; length=105bp
ACCCCTAACAACATTAAACAAGGGTTGGTTGCCTAGCCTCCGTTCTAATC
[A/G]TGCCTATTGCTACAGTATTTGCAACCCTATTTTGCCAAAGGCCCA
TCGGA