TAMU_GH_TBb019L02r318, TAMU_GH_TBb019L02r318 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb019L02r318
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i48509Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05chromosomeChr05:1493547..1493547 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D02chromosomeD02:1805913..1806013 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D02chromosomeD02:1904999..1905099 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:1573741..1573841 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
scaffold4782.1supercontigscaffold4782.1:10185..10285 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3007.1supercontigscaffold3007.1:51522..51622 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:1791544..1791644 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:1775994..1776094 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D02chromosomeGhir_D02:1838939..1839037 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:1651566..1651666 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:1682330..1682430 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:1759508..1759608 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:1858571..1858671 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:1725647..1725747 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D02chromosomeD02:1627880..1627980 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:1764940..1765040 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:1594084..1594184 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:1886316..1886416 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017624.1chromosomeCM017624.1:1706358..1706458 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017624.1chromosomeCM017624.1:1821902..1822002 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:2006167..2006267 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:1523250..1523350 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017702.1chromosomeCM017702.1:1396751..1396851 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017702.1chromosomeCM017702.1:1500513..1500613 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:1763226..1763326 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D02chromosomeD02:1862316..1862416 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:1545194..1545294 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:1546286..1546386 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr05chromosomeChr05:1224226..1224326 -Gossypium gossypioides (D6) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch14_Dt.02N/A6.63i48509GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch14_Dt.02N/A6.63i48509GhView
Sequence
>TAMU_GH_TBb019L02r318 ID=TAMU_GH_TBb019L02r318; Name=TAMU_GH_TBb019L02r318; organism=Gossypium sp.; type=genetic_marker; length=105bp
AGAAGTATTACTATCTTGATTGTAATAAATGCGGTAAGCCTTGTGAAGAT
[A/G]TGGCTCTTGAATGCTCAAAGTTGGAGTGCAAATATATTGTCTACT
GGGAT