TAMU_GH_TBb013H11r698, TAMU_GH_TBb013H11r698 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb013H11r698
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i24299Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr02chromosomeChr02:47968958..47968958 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D01chromosomeD01:48454298..48454398 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:47395773..47395873 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:42135559..42135658 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_01chromosomeD10_01:15023204..15023304 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr2chromosomeDt_chr2:7876122..7876222 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:45748762..45748862 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:47458794..47458894 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:49318524..49318624 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:48820080..48820180 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:46391452..46391552 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:47621420..47621520 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:48349990..48350090 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:48481813..48481913 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:49589861..49589961 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:47854232..47854332 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:49313219..49313319 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:37658469..37658569 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:45967039..45967139 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:34871045..34871145 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:31749911..31750011 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:46714258..46714358 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:34557178..34557278 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:33123924..33124024 +Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch02_At.02N/A41.35i24299GhView
2Phytogen 72 x Stoneville 474, consbin (2017)AD_ch15_Dt.01N/A53.81i24299GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch02_At.02N/A41.35i24299GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch15_Dt.01N/A61.9i24299GhView
Sequence
>TAMU_GH_TBb013H11r698 ID=TAMU_GH_TBb013H11r698; Name=TAMU_GH_TBb013H11r698; organism=Gossypium sp.; type=genetic_marker; length=105bp
GCATGATATTTGGGAACTCGAATTTTAAGAGATGAATTTAGTTTTCTAAA
[A/C]TGGTGTTAGTTGTGTGATAAAACACATAAATATCATGACCTTGCA
GCACT