TAMU_GH_TBb008E23r176, TAMU_GH_TBb008E23r176 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb008E23r176
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i23762Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05chromosomeChr05:20531740..20531740 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D02chromosomeD02:23206406..23206506 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:21354131..21354231 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:42793441..42793541 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr5chromosomeDt_chr5:61977406..61977506 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:22765704..22765804 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:22262781..22262881 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:22271453..22271553 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:22169093..22169193 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:22192802..22192902 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:21779295..21779395 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:21832009..21832109 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:21961096..21961196 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:23055402..23055502 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:21564294..21564394 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:22635255..22635355 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:20119616..20119716 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:21930522..21930622 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch14_Dt.02N/A43.29i23762GhView
20-153 x sGK9708, RIL (2017)AD_ch14_Dt.02N/A48.92i23762GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch14_Dt.02N/A43.29i23762GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch14_Dt.02N/A57.1i23762GhView
Sequence
>TAMU_GH_TBb008E23r176 ID=TAMU_GH_TBb008E23r176; Name=TAMU_GH_TBb008E23r176; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTTTCAGGTGAAGTACTTCTTGACTGACTCTGCATTTACTAGGTTAGGCA
[A/G]GTTCTTGCCATCCATCTCAGCTAATATCAATGCTCCTCCAGAAAA
GCCCT