NAU_TM13482, NAU_TM13482 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM13482
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM13482
TypeSNP
SNP AllelesC/T
5' Flanking SequenceGTTTAATCTGATTGCAATAGCCTTTATATAGGCTAAACTCATAATATTAAAGTGTTTAAA
3' Flanking SequenceTATCATTGAAGTACTTAGAGTTCGATTAGGAAAAATACCCCTAATTGCCTTAACAAACGC
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018206.1chromosomeCM018206.1:101119181..101119301 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:97102728..97102848 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr10chromosomeAt_chr10:47133318..47133438 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:90763065..90763185 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:107934585..107934705 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:109444718..109444838 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:108039030..108039150 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:105994298..105994418 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:101277052..101277172 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:106219680..106219800 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:103632892..103633012 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:112295807..112295927 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:104142502..104142622 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:109819886..109820006 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:1570400..1570520 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:1539978..1540098 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch05_At.05N/A151.25TM13482View
Sequence
>NAU_TM13482 ID=NAU_TM13482; Name=NAU_TM13482; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
GTTTAATCTGATTGCAATAGCCTTTATATAGGCTAAACTCATAATATTAA
AGTGTTTAAA[C/T]TATCATTGAAGTACTTAGAGTTCGATTAGGAAAAA
TACCCCTAATTGCCTTAACAAACGC