NAU_TM00378, NAU_TM00378 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00378
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00378
TypeSNP
SNP AllelesA/G
5' Flanking SequenceCAAATTTTGGTATAATGATACCAAAAAAATAGCTAAATTGGGGTTTTGGGGGATCTTGGT
3' Flanking SequenceTCGAAATACCATTCCATGATGTCGCAATGCCACTAGAAAATGACTCAACTTCTTCGCTTC
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:7943880..7944001 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:8997602..8997723 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:8360943..8361063 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:7637036..7637156 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:7945077..7945197 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:7642733..7642853 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:8100265..8100385 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:7913185..7913305 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:7971935..7972056 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:7652843..7652964 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:8943263..8943384 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:8071646..8071767 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:8135551..8135671 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:8109067..8109187 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:8805917..8806038 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch01_At.01N/A49.8TM378View
2LMY28 x XLZ24, RIL (2018)AD_ch01_At.01N/A26.32TM378View
Sequence
>NAU_TM00378 ID=NAU_TM00378; Name=NAU_TM00378; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
CAAATTTTGGTATAATGATACCAAAAAAATAGCTAAATTGGGGTTTTGGG
GGATCTTGGT[A/G]TCGAAATACCATTCCATGATGTCGCAATGCCACTA
GAAAATGACTCAACTTCTTCGCTTC