UCcg10456_244, UCcg10456_244 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10456_244
AliasUCcg10456_244
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceCTTGGTTAATGGGTATAGATTCTGGTTTTG
3' Flanking SequenceAAATTGGTTAGCGAATTTAAACCTAGCTAC
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg10456_F: GGCATAGGGCGTAGACAATC
Primer 2cg10456_R: CTGCAATGAAAAGCCCATCT
Primer 3cg10456_F: GGCATAGGGCGTAGACAATC
Primer 4cg10456_R: CTGCAATGAAAAGCCCATCT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018208.1chromosomeCM018208.1:92402495..92402555 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:96021470..96021530 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold2269.1supercontigscaffold2269.1:116752..116812 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:76870187..76870246 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:96329674..96329733 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:95250617..95250676 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:95325532..95325592 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:91838704..91838763 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A07chromosomeGbar_A07:91344746..91344806 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:93661588..93661648 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:95363875..95363935 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:98250539..98250599 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:93701978..93702038 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:97515158..97515217 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:99256801..99256861 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:100594608..100594668 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_07chromosomeB_07:81536137..81536197 +Gossypium anomalum (B1) genome NSF_v1n/a
F07chromosomeF07:81051022..81051082 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:156100735..156100795 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>UCD_cg10456_244 ID=UCD_cg10456_244; Name=UCD_cg10456_244; organism=Gossypium spp.; type=genetic_marker; length=65bp
CTTGGTTAATGGGTATAGATTCTGGTTTTG[C/T]AAATTGGTTAGCGAA
TTTAAACCTAGCTAC