UCcg10297_621, UCcg10297_621 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10297_621
AliasUCcg10297_621
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceATGAAAAATGGAAAAATTGAAGTTGGAAAA
3' Flanking SequenceAAGAGAAAAAAATTTACCTTTTGGGGGAAA
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10297_F: ACAATGGAGGCAGCAAGAAC
Primer 2cg10297_R: AAGGTTCAAAATCGACGGTG
Primer 3cg10297_F: ACAATGGAGGCAGCAAGAAC
Primer 4cg10297_R: AAGGTTCAAAATCGACGGTG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018209.1chromosomeCM018209.1:117150712..117150772 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM016621.1chromosomeCM016621.1:2417316..2417374 +Gossypium australe (G2) genome CRI_v1.1
Dt_chr5chromosomeDt_chr5:13270866..13270926 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold5681supercontigscaffold5681:4626..4686 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A08chromosomeGhir_A08:120679747..120679807 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A08chromosomeA08:123224525..123224585 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A08chromosomeA08:123589183..123589243 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A08chromosomeA08:119262522..119262582 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A08chromosomeGbar_A08:117827376..117827436 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A08chromosomeA08:118778303..118778363 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017617.1chromosomeCM017617.1:117351929..117351989 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017643.1chromosomeCM017643.1:127116972..127117032 -Gossypium mustelinum (AD4) genome JGI_v1.1
A08chromosomeA08:125508592..125508652 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr08chromosomeChr08:130047040..130047099 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr08chromosomeChr08:130857110..130857169 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
F08chromosomeF08:102852001..102852060 -Gossypium longicalyx (F1) genome NSF_v1
Sequence
>UCD_cg10297_621 ID=UCD_cg10297_621; Name=UCD_cg10297_621; organism=Gossypium spp.; type=genetic_marker; length=65bp
ATGAAAAATGGAAAAATTGAAGTTGGAAAA[C/T]AAGAGAAAAAAATTT
ACCTTTTGGGGGAAA