UCcg10265_232, UCcg10265_232 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10265_232
AliasUCcg10265_232
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceCCAAAACCCTTTCCTTTTTTGTCTTCCAAT
3' Flanking SequenceTTACTGTTACTTTAGCCTGCTCTCTAGTTA
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10265_F: TCAAGACTGTTTGGCAGGTG
Primer 2cg10265_R: TCCAACAAAAGGCTAACGCT
Primer 3cg10265_F: TCAAGACTGTTTGGCAGGTG
Primer 4cg10265_R: TCCAACAAAAGGCTAACGCT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018209.1chromosomeCM018209.1:101862381..101862441 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:110868325..110868385 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold294.1supercontigscaffold294.1:425074..425134 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:87555601..87555661 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:105670896..105670956 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:108781162..108781222 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:108486856..108486916 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:104540824..104540884 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A08chromosomeGbar_A08:102462519..102462579 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:103714040..103714100 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:102113119..102113179 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:111667329..111667389 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:102729697..102729757 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:110328198..110328258 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:113802530..113802590 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:114782912..114782972 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
chr04chromosomechr04:37778166..37778226 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Sequence
>UCD_cg10265_232 ID=UCD_cg10265_232; Name=UCD_cg10265_232; organism=Gossypium spp.; type=genetic_marker; length=65bp
CCAAAACCCTTTCCTTTTTTGTCTTCCAAT[A/G]TTACTGTTACTTTAG
CCTGCTCTCTAGTTA