UCcg10239_103, UCcg10239_103 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10239_103
AliasUCcg10239_103
dbSNP IDN/A
TypeSNP
SNP AllelesA/C
5' Flanking SequenceCATGCTATTAGGTGTATGGGCTGGAGTAGA
3' Flanking SequenceAATCATGGAATGACTACTTTTTTTGGATGT
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10239_F: CGTGTCATTTGGAGATGCTG
Primer 2cg10239_R: CCCAAGCAAAACAGAGAACC
Primer 3cg10239_F: CGTGTCATTTGGAGATGCTG
Primer 4cg10239_R: CCCAAGCAAAACAGAGAACC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:90263858..90263918 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:25962527..25962587 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:12145496..12145556 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:82171605..82171665 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:95939193..95939253 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:97119588..97119648 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:96045220..96045280 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:91140276..91140336 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:90430020..90430080 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:92230816..92230876 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:91757103..91757163 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:99318023..99318083 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:93548081..93548141 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:99032801..99032861 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:105362644..105362704 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:98850856..98850916 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_10chromosomeB_10:23192465..23192524 -Gossypium anomalum (B1) genome NSF_v1n/a
F10chromosomeF10:74818802..74818862 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>UCD_cg10239_103 ID=UCD_cg10239_103; Name=UCD_cg10239_103; organism=Gossypium spp.; type=genetic_marker; length=65bp
CATGCTATTAGGTGTATGGGCTGGAGTAGA[A/C]AATCATGGAATGACT
ACTTTTTTTGGATGT