UCcg10199_252, UCcg10199_252 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10199_252
AliasUCcg10199_252
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceGATATGGTTTGCATCTGCATTTGGGATTAA
3' Flanking SequenceAATTGATTTCGAAAAGAAGGAAGTTCGTAT
SpeciesGossypium spp.
Source TypeSSR
Primer 1cg10199_F: GCGTTATGCTAAACTCGGAATAC
Primer 2cg10199_R: ACCTCAATATGGTCGTATGCAA
Primer 3cg10199_F: GCGTTATGCTAAACTCGGAATAC
Primer 4cg10199_R: ACCTCAATATGGTCGTATGCAA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:12224655..12224715 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:12094023..12094083 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr13chromosomeDt_chr13:81542..81602 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:12530238..12530298 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:12504344..12504404 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:12221482..12221542 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:12727289..12727349 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:12403405..12403465 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:12416134..12416194 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:11821256..11821316 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017661.1chromosomeCM017661.1:12817217..12817277 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:12422534..12422594 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:12898079..12898139 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:12006720..12006780 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:12752872..12752932 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:10567491..10567551 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:7691200..7691260 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:10195431..10195491 -Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>UCD_cg10199_252 ID=UCD_cg10199_252; Name=UCD_cg10199_252; organism=Gossypium spp.; type=genetic_marker; length=65bp
GATATGGTTTGCATCTGCATTTGGGATTAA[A/G]AATTGATTTCGAAAA
GAAGGAAGTTCGTAT