UCcg10163_196, UCcg10163_196 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10163_196
AliasUCcg10163_196
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
5' Flanking SequenceGTCGTGTAACTCACTATCTAGTTGTGCTAA
3' Flanking SequenceATAGAGTACAAGGCAGACACGACCGTGTGT
SpeciesGossypium spp.
Source TypeSSR
Primer 1cg10163_F: ACGGGTTCAGAATTAGACATCAG
Primer 2cg10163_R: GTATGTTTTGGTGCCACACG
Primer 3cg10163_F: ACGGGTTCAGAATTAGACATCAG
Primer 4cg10163_R: GTATGTTTTGGTGCCACACG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018209.1chromosomeCM018209.1:110091805..110091865 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:119678153..119678213 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
scaffold149.1supercontigscaffold149.1:1593444..1593504 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A08chromosomeA08:95484976..95485036 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A08chromosomeGhir_A08:113324862..113324922 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A08chromosomeA08:116213026..116213086 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A08chromosomeA08:116141077..116141137 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A08chromosomeA08:112061084..112061144 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A08chromosomeGbar_A08:110773337..110773397 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A08chromosomeA08:111845107..111845167 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017617.1chromosomeCM017617.1:110276109..110276169 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017643.1chromosomeCM017643.1:119714932..119714992 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017695.1chromosomeCM017695.1:110892481..110892541 +Gossypium darwinii (AD5) genome HGS_v1.1
A08chromosomeA08:118035410..118035470 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr08chromosomeChr08:122315052..122315112 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr08chromosomeChr08:123327275..123327335 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
chr10chromosomechr10:6002329..6002387 +Gossypium armourianum (D2-1) genome ISU_v1
Sequence
>UCD_cg10163_196 ID=UCD_cg10163_196; Name=UCD_cg10163_196; organism=Gossypium spp.; type=genetic_marker; length=65bp
GTCGTGTAACTCACTATCTAGTTGTGCTAA[A/T]ATAGAGTACAAGGCA
GACACGACCGTGTGT