HAU3407, HAU3407 (genetic_marker) gossypium spp

Marker Overview
NameHAU3407
Genbank IDGR716890
TypeSSR
SpeciesGossypium spp.
Source SequenceGR716806.1
Source TypeEST
Repeat Motif(TCT)5
PCR ConditionAnnealing temperature: 56.3
Primer 1HAU3407_F: AGCCGTTTCGTCTCATCCTCA
Primer 2HAU3407_R: TGGCATCTCCGGTGCAACTC
Product Length307
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGR716890
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A13chromosomeA13:94937460..94937966 -
CM018214.1chromosomeCM018214.1:100319339..100319847 +
D5_13chromosomeD5_13:50030245..50030744 -
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:114031441..114031946 -
D10_13chromosomeD10_13:53779805..53780304 +
CM016626.1chromosomeCM016626.1:148407153..148407654 +
At_chr13chromosomeAt_chr13:22238890..22239396 +
A13chromosomeA13:71508235..71508741 -
Ghir_A13chromosomeGhir_A13:100032999..100033505 +
A13chromosomeA13:102379241..102379747 +
A13chromosomeA13:100518179..100518685 +
A13chromosomeA13:98978424..98978930 +
scaffold2711supercontigscaffold2711:297810..298318 +
Gbar_A13chromosomeGbar_A13:101266438..101266946 +
A13chromosomeA13:104655539..104656047 +
CM017622.1chromosomeCM017622.1:102220844..102221351 +
CM017648.1chromosomeCM017648.1:107128020..107128528 +
CM017700.1chromosomeCM017700.1:102346335..102346843 +
A13chromosomeA13:103240759..103241265 +
Chr13chromosomeChr13:109080973..109081483 +
Chr13chromosomeChr13:113756238..113756743 +
Chr13chromosomeChr13:50021520..50022019 -
B_13chromosomeB_13:10039056..10039556 -
Chr13chromosomeChr13:52943671..52944170 +
chr13chromosomechr13:37658561..37659060 -
Chr_13chromosomeChr_13:35974236..35974735 -
Chr13chromosomeChr13:55804718..55805217 +
Chr13chromosomeChr13:35074098..35074597 -
Chr13chromosomeChr13:27327029..27327528 -
Chr13chromosomeChr13:34252494..34252993 -
E13chromosomeE13:105206198..105206700 +
F13chromosomeF13:88209559..88210056 +
Chr13chromosomeHAU3407:1..726 .
Chr13:48934595..48935513 -
Chr9chromosomeHAU3407:1..726 .
Chr9:32837037..32837955 -
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GR716806.1GR716806.1Gossypium spp.sequence_feature


Sequence
>HAU3407 ID=HAU3407; Name=HAU3407; organism=Gossypium spp.; type=genetic_marker; length=307bp
AGCCGTTTCGTCTCATCCTCATCGTCAACCCCATATTCCTCTTCTTCTTC
TTCTTTTCTCTCTCTTTTTCATCGGGAAATTCGATATTGTTTCCGCTCTA
AATTACACCAAGTATACTAGGAAAGTGAGTAACTTGAGGCTTCAAAGAAT
TCAAAAACACTTGGAAAAGATCAACAAGCCTGCTGTCATCACCATTGAGA
GCCCAGATGGAGATATCATAGATTGTGTTCATAAAAGAAAACAGCCAGCT
TTGGATCACCCTCTTCTGAAAAAACATAAGATTCAGAGAGTTGCACCGGA
GATGCCA