HAU3403, HAU3403 (genetic_marker) gossypium spp

Marker Overview
NameHAU3403
Genbank IDGR716890
TypeSSR
SpeciesGossypium spp.
Source SequenceGR716602.1
Source TypeEST
Repeat Motif(GAGGAT)3
PCR ConditionAnnealing temperature: 55.9
Primer 1HAU3403_F: TCCCACTGGTAAAGGTGGATGA
Primer 2HAU3403_R: GCCACTCACGCTCCCAACTT
Product Length221
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGR716890
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:48550859..48551241 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:48827220..48827610 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:42421645..42422023 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_02chromosomeD10_02:46810257..46810650 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold154.1supercontigscaffold154.1:1107011..1107393 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:42383450..42383832 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:48357127..48357509 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:49686009..49686391 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:49336263..49336645 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:48609340..48609722 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt03chromosomeDt03:44892358..44892748 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17869supercontigscaffold17869:264333..264723 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:47223780..47224168 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:49611099..49611489 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:48059436..48059820 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:52152162..52152548 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:49699224..49699614 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:50609502..50609884 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:44512582..44512960 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:4507146..4507521 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:46118628..46119007 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:31203244..31203727 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr03chromosomeChr03:48014662..48015052 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:28854244..28854745 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr02chromosomeChr02:5755566..5755939 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GR716602.1GR716602.1Gossypium spp.sequence_feature


Sequence
>HAU3403 ID=HAU3403; Name=HAU3403; organism=Gossypium spp.; type=genetic_marker; length=221bp
TCCCACTGGTAAAGGTGGATGATGAGGATTTCTATGATGTGCCATATGAG
TCAGAATATGATAGTGAAGATTCAAATGCTGAAGATAATCCAAGAAATGA
TTATCCTGATGAATCATCTGAAGAGGAGGAAGAGGATGAGGATGAGGATG
AGGAGACTAAAGCGTCTGATCAATCAGGAGAAGGAAGTAGCAAATCTTCA
GAAGTTGGGAGCGTGAGTGGC