HAU3293, HAU3293 (genetic_marker) gossypium spp

Marker Overview
NameHAU3293
Genbank IDGR716890
TypeSSR
SpeciesGossypium spp.
Source SequenceGR711883.1
Source TypeEST
Repeat Motif(CTA)11
PCR ConditionAnnealing temperature: 55.5
Primer 1HAU3293_F: GATAGCTCCGCGTGATGCCT
Primer 2HAU3293_R: TGCTACGCAAAACCACTCCA
Product Length188
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGR716890
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:55384278..55384456 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:52020034..52020221 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:48156643..48156827 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_08chromosomeD10_08:12761718..12761890 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr10chromosomeDt_chr10:6778961..6779139 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:52034688..52034866 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:54645865..54646043 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:105887073..105887239 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:55491362..55491540 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:54540431..54540609 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:51835651..51835829 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt08chromosomeDt08:53808202..53808389 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt08chromosomeDt08:53805318..53805505 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At08chromosomeAt08:91790611..91791110 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At08chromosomeAt08:91794341..91794507 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2605supercontigscaffold2605:145499..145998 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2605supercontigscaffold2605:149229..149395 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold25824supercontigscaffold25824:19654..19841 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold25824supercontigscaffold25824:16770..16957 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:52002658..52002842 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:102701044..102701210 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:54078119..54078306 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:53436277..53436455 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:55415286..55415467 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:52629230..52629414 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:55147637..55147815 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:49057744..49057934 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:50545156..50545331 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:37915158..37915327 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:34301390..34301562 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:52912389..52912554 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:33255776..33255951 +Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:27975662..27975828 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:33553466..33553635 +Gossypium lobatum (D7) genome ISU_v1n/a
F08chromosomeF08:89611268..89611436 +Gossypium longicalyx (F1) genome NSF_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GR711883.1GR711883.1Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch24_Dt.08N/A49.51HAU3293View
2Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A43HAU3293View
Sequence
>HAU3293 ID=HAU3293; Name=HAU3293; organism=Gossypium spp.; type=genetic_marker; length=188bp
GATAGCTCCGCGTGATGCCTTTATATGCTTCATACTGATACTGCTAATAG
TAAATGACAATTCTACTACTACTACTACTACTACTACTACTACTAATAAT
AATAATGCATCTCATTCAATACATGGATACAAAGAATGAGTGGTTTGGTT
TGTTTTCTTTTGTTCTGTTGGAGTGGTTTTGCGTAGCA